Variant report

Variant	rs10456197
Chromosome Location	chr6:14888270-14888271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14888203..14890239-chr6:14895122..14896624,2	K562	blood:
2	chr6:14882657..14885190-chr6:14887791..14890499,2	K562	blood:
3	chr6:14872119..14873889-chr6:14887014..14889043,2	K562	blood:
4	chr6:14886333..14888051-chr6:14888105..14890290,2	MCF-7	breast:
5	chr6:14878630..14881043-chr6:14886019..14889778,3	K562	blood:
6	chr6:14887758..14891402-chr6:15064654..15067912,3	MCF-7	breast:
7	chr6:14887062..14891026-chr6:15088768..15091846,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234261	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10456198	1.00[EUR][1000 genomes]
rs10456765	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12195833	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12197756	1.00[EUR][1000 genomes]
rs12204187	1.00[EUR][1000 genomes]
rs12209534	1.00[EUR][1000 genomes]
rs12216386	1.00[EUR][1000 genomes]
rs12374643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs446711	1.00[EUR][1000 genomes]
rs6937796	1.00[EUR][1000 genomes]
rs873254	1.00[EUR][1000 genomes]
rs9349960	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14877400-14889000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:14880800-14889000	Weak transcription	Spleen	Spleen
3	chr6:14881600-14888800	Weak transcription	A549	lung
4	chr6:14883200-14888400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:14883200-14888400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:14883200-14889200	Weak transcription	Small Intestine	intestine
7	chr6:14883600-14889000	Weak transcription	Stomach Mucosa	stomach
8	chr6:14883800-14888800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:14884600-14889800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:14884800-14890000	Weak transcription	K562	blood
11	chr6:14884800-14891600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:14884800-14892800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:14884800-14893800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:14885200-14893400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:14885200-14893600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:14886000-14890400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:14886200-14888600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:14886200-14889000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:14886600-14888400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:14886600-14888400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:14887000-14889800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr6:14887200-14889200	Enhancers	Right Ventricle	heart
23	chr6:14887800-14888400	Weak transcription	Psoas Muscle	Psoas
24	chr6:14887800-14889200	Enhancers	Left Ventricle	heart
25	chr6:14888200-14889200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr6:14888200-14889400	Enhancers	Adipose Nuclei	Adipose
27	chr6:14888200-14890400	Weak transcription	Right Atrium	heart

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