Variant report

Variant	rs446711
Chromosome Location	chr6:14884810-14884811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14883074..14885637-chr6:15431868..15434468,2	K562	blood:
2	chr6:14882657..14885190-chr6:14887791..14890499,2	K562	blood:
3	chr6:14882855..14884940-chr6:15106180..15108933,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10085175	1.00[ASN][1000 genomes]
rs10456197	1.00[EUR][1000 genomes]
rs10456198	1.00[EUR][1000 genomes]
rs10456765	1.00[EUR][1000 genomes]
rs12195833	1.00[EUR][1000 genomes]
rs12197756	1.00[EUR][1000 genomes]
rs12204187	1.00[EUR][1000 genomes]
rs12209534	1.00[EUR][1000 genomes]
rs12216386	1.00[EUR][1000 genomes]
rs12374643	1.00[EUR][1000 genomes]
rs13437579	1.00[ASN][1000 genomes]
rs28444386	1.00[ASN][1000 genomes]
rs28461820	1.00[ASN][1000 genomes]
rs34060138	1.00[ASN][1000 genomes]
rs388183	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6937796	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs724700	1.00[ASN][1000 genomes]
rs873254	1.00[EUR][1000 genomes]
rs9349960	1.00[EUR][1000 genomes]
rs9464728	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9464729	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9464730	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs9464731	1.00[ASN][1000 genomes]
rs9464732	1.00[ASN][1000 genomes]
rs9464733	1.00[ASN][1000 genomes]
rs9464734	1.00[ASN][1000 genomes]
rs9476669	1.00[ASN][1000 genomes]
rs9476674	1.00[ASN][1000 genomes]
rs9476675	1.00[ASN][1000 genomes]
rs9476676	1.00[ASN][1000 genomes]
rs9476678	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9476679	1.00[ASN][1000 genomes]
rs9476680	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9476682	1.00[ASN][1000 genomes]
rs9476683	0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9476684	1.00[ASN][1000 genomes]
rs9476685	1.00[ASN][1000 genomes]
rs9476686	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14871600-14886600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:14877400-14889000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:14878200-14885600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:14880400-14886400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:14880400-14886400	Enhancers	Fetal Stomach	stomach
6	chr6:14880800-14889000	Weak transcription	Spleen	Spleen
7	chr6:14881000-14885000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:14881600-14888800	Weak transcription	A549	lung
9	chr6:14882000-14886600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr6:14882400-14885200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:14882400-14885200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:14883200-14886200	Weak transcription	Lung	lung
13	chr6:14883200-14888400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:14883200-14888400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:14883200-14889200	Weak transcription	Small Intestine	intestine
16	chr6:14883400-14885800	Weak transcription	Right Atrium	heart
17	chr6:14883600-14889000	Weak transcription	Stomach Mucosa	stomach
18	chr6:14883800-14885200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:14883800-14885800	Weak transcription	Osteobl	bone
20	chr6:14883800-14888800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:14884000-14885000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:14884000-14885000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:14884400-14885400	Weak transcription	NH-A	brain
24	chr6:14884400-14887200	Weak transcription	Right Ventricle	heart
25	chr6:14884600-14885600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:14884600-14885600	Weak transcription	NHLF	lung
27	chr6:14884600-14886000	Weak transcription	Fetal Thymus	thymus
28	chr6:14884600-14887600	Weak transcription	Psoas Muscle	Psoas
29	chr6:14884600-14889800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:14884800-14885800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:14884800-14885800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:14884800-14885800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:14884800-14885800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:14884800-14885800	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:14884800-14885800	Weak transcription	NHDF-Ad	bronchial
36	chr6:14884800-14886000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:14884800-14886000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr6:14884800-14886200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr6:14884800-14887800	Weak transcription	Left Ventricle	heart
40	chr6:14884800-14888200	Weak transcription	Adipose Nuclei	Adipose
41	chr6:14884800-14888200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:14884800-14890000	Weak transcription	K562	blood
43	chr6:14884800-14891600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr6:14884800-14892800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr6:14884800-14893800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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