Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:14889597..14891990-chr6:15061362..15063428,2	K562	blood:
2	chr6:14882657..14885190-chr6:14887791..14890499,2	K562	blood:
3	chr6:14888308..14890393-chr6:15254270..15256315,2	MCF-7	breast:
4	chr6:14890239..14892140-chr6:15247131..15249748,2	MCF-7	breast:
5	chr6:14887758..14891402-chr6:15064654..15067912,3	MCF-7	breast:
6	chr6:14889124..14892994-chr6:15246955..15250888,4	MCF-7	breast:
7	chr6:14887062..14891026-chr6:15088768..15091846,4	MCF-7	breast:
8	chr6:14889916..14891466-chr6:15090101..15091814,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10085175	1.00[ASN][1000 genomes]
rs13437579	1.00[ASN][1000 genomes]
rs28444386	1.00[ASN][1000 genomes]
rs28461820	1.00[ASN][1000 genomes]
rs34060138	1.00[ASN][1000 genomes]
rs388183	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs446711	1.00[ASN][1000 genomes]
rs724700	1.00[ASN][1000 genomes]
rs9464728	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9464729	0.80[ASW][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9464731	1.00[ASN][1000 genomes]
rs9464732	1.00[ASN][1000 genomes]
rs9464733	1.00[ASN][1000 genomes]
rs9464734	1.00[ASN][1000 genomes]
rs9476669	1.00[ASN][1000 genomes]
rs9476674	1.00[ASN][1000 genomes]
rs9476675	1.00[ASN][1000 genomes]
rs9476676	1.00[ASN][1000 genomes]
rs9476678	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9476679	1.00[ASN][1000 genomes]
rs9476680	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9476682	1.00[ASN][1000 genomes]
rs9476683	0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9476684	1.00[ASN][1000 genomes]
rs9476685	1.00[ASN][1000 genomes]
rs9476686	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14884800-14891600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:14884800-14892800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:14884800-14893800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:14885200-14893400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:14885200-14893600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:14886000-14890400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:14888200-14890400	Weak transcription	Right Atrium	heart
8	chr6:14888600-14890400	Enhancers	Fetal Intestine Small	intestine
9	chr6:14889000-14890600	Enhancers	Duodenum Mucosa	Duodenum
10	chr6:14889000-14890800	Enhancers	Stomach Mucosa	stomach
11	chr6:14889200-14891600	Weak transcription	Esophagus	oesophagus
12	chr6:14889600-14890400	Enhancers	Fetal Intestine Large	intestine
13	chr6:14889600-14890400	Weak transcription	Lung	lung
14	chr6:14889800-14890600	Enhancers	Pancreas	Pancrea
15	chr6:14889800-14890600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr6:14890000-14890600	Enhancers	Placenta	Placenta
17	chr6:14890000-14890600	Enhancers	A549	lung
18	chr6:14890000-14890800	Enhancers	K562	blood
19	chr6:14890000-14891000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
20	chr6:14890200-14890600	Enhancers	Small Intestine	intestine
21	chr6:14890200-14890800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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