Variant report

Variant	rs388183
Chromosome Location	chr6:14875178-14875179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14873407..14875194-chr6:15247880..15249732,2	MCF-7	breast:
2	chr6:14870064..14873401-chr6:14874524..14877493,5	K562	blood:
3	chr6:14873522..14875982-chr6:14876555..14879315,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTNBP1-5	chr6:14874500-14875285	NONHSAT107859

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction
ENSG00000235488	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10085175	1.00[ASN][1000 genomes]
rs13437579	1.00[ASN][1000 genomes]
rs28444386	1.00[ASN][1000 genomes]
rs28461820	1.00[ASN][1000 genomes]
rs34060138	1.00[ASN][1000 genomes]
rs446711	1.00[ASN][1000 genomes]
rs724700	1.00[ASN][1000 genomes]
rs9464728	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9464729	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9464730	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9464731	1.00[ASN][1000 genomes]
rs9464732	1.00[ASN][1000 genomes]
rs9464733	1.00[ASN][1000 genomes]
rs9464734	1.00[ASN][1000 genomes]
rs9476669	1.00[ASN][1000 genomes]
rs9476674	1.00[ASN][1000 genomes]
rs9476675	1.00[ASN][1000 genomes]
rs9476676	1.00[ASN][1000 genomes]
rs9476678	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9476679	1.00[ASN][1000 genomes]
rs9476680	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9476682	1.00[ASN][1000 genomes]
rs9476683	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9476684	1.00[ASN][1000 genomes]
rs9476685	1.00[ASN][1000 genomes]
rs9476686	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14864800-14880600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:14866200-14875400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:14866600-14880400	Weak transcription	Spleen	Spleen
4	chr6:14867000-14876600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:14869400-14875400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:14869600-14875200	Enhancers	Fetal Thymus	thymus
7	chr6:14871600-14877000	Weak transcription	HSMM	muscle
8	chr6:14871600-14886600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:14872000-14877200	Weak transcription	Fetal Heart	heart
10	chr6:14872000-14877200	Weak transcription	HSMMtube	muscle
11	chr6:14872400-14877000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:14872400-14877000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:14872400-14877000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:14872400-14877200	Weak transcription	Psoas Muscle	Psoas
15	chr6:14873000-14875200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:14873000-14877000	Weak transcription	Left Ventricle	heart
17	chr6:14873200-14875600	Enhancers	GM12878-XiMat	blood
18	chr6:14873600-14876400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr6:14873600-14876400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:14873800-14875400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr6:14873800-14877000	Weak transcription	Primary B cells from cord blood	blood
22	chr6:14873800-14877000	Weak transcription	Primary T cells from cord blood	blood
23	chr6:14874400-14875200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:14874400-14876200	Enhancers	H1 Cell Line	embryonic stem cell
25	chr6:14874400-14878400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:14874600-14875200	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr6:14874600-14876600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:14874600-14876800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:14874800-14875800	Enhancers	H9 Cell Line	embryonic stem cell
30	chr6:14874800-14876200	Weak transcription	Thymus	Thymus
31	chr6:14874800-14877000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr6:14874800-14878200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr6:14875000-14875200	Enhancers	Adipose Nuclei	Adipose
34	chr6:14875000-14875400	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:14875000-14877200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr6:14875000-14877200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr6:14875000-14877200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:14875000-14877200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:14875000-14882600	Weak transcription	Fetal Intestine Small	intestine

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