Variant report

Variant	rs9476676
Chromosome Location	chr6:14878251-14878252
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14873522..14875982-chr6:14876555..14879315,2	K562	blood:
2	chr6:14861978..14864557-chr6:14877421..14879911,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10085175	1.00[ASN][1000 genomes]
rs11968790	0.83[AMR][1000 genomes]
rs13437579	1.00[ASN][1000 genomes]
rs28444386	1.00[ASN][1000 genomes]
rs28461820	1.00[ASN][1000 genomes]
rs34060138	1.00[ASN][1000 genomes]
rs388183	1.00[ASN][1000 genomes]
rs446711	1.00[ASN][1000 genomes]
rs724700	1.00[ASN][1000 genomes]
rs9464725	1.00[AMR][1000 genomes]
rs9464728	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9464729	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9464730	1.00[ASN][1000 genomes]
rs9464731	1.00[ASN][1000 genomes]
rs9464732	1.00[ASN][1000 genomes]
rs9464733	1.00[ASN][1000 genomes]
rs9464734	1.00[ASN][1000 genomes]
rs9476669	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476674	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9476675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476679	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476680	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476682	1.00[ASN][1000 genomes]
rs9476683	1.00[ASN][1000 genomes]
rs9476684	1.00[ASN][1000 genomes]
rs9476685	1.00[ASN][1000 genomes]
rs9476686	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14864800-14880600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:14866600-14880400	Weak transcription	Spleen	Spleen
3	chr6:14871600-14886600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:14874400-14878400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:14875000-14882600	Weak transcription	Fetal Intestine Small	intestine
6	chr6:14875600-14880200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:14875600-14882600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:14876400-14878800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:14876600-14878600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:14876600-14878600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:14876600-14882000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:14876800-14878400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr6:14876800-14878600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:14876800-14883600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:14877000-14878400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:14877000-14878400	Enhancers	Primary B cells from cord blood	blood
17	chr6:14877000-14878400	Enhancers	Adipose Nuclei	Adipose
18	chr6:14877000-14878400	Enhancers	Fetal Muscle Trunk	muscle
19	chr6:14877000-14878400	Enhancers	Fetal Thymus	thymus
20	chr6:14877000-14878400	Enhancers	Small Intestine	intestine
21	chr6:14877000-14878400	Enhancers	HSMM	muscle
22	chr6:14877000-14878600	Enhancers	Primary B cells from peripheral blood	blood
23	chr6:14877000-14878600	Enhancers	Primary T cells fromperipheralblood	blood
24	chr6:14877000-14878600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:14877000-14878600	Enhancers	Left Ventricle	heart
26	chr6:14877200-14878400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr6:14877200-14878400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:14877200-14878400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:14877200-14878400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr6:14877200-14878400	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr6:14877200-14878400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:14877200-14878400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:14877200-14878400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:14877200-14878400	Enhancers	Fetal Muscle Leg	muscle
35	chr6:14877200-14878400	Enhancers	HSMMtube	muscle
36	chr6:14877200-14878600	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr6:14877200-14878600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr6:14877200-14878600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:14877200-14879200	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr6:14877400-14878400	Enhancers	Thymus	Thymus
41	chr6:14877400-14878600	Enhancers	GM12878-XiMat	blood
42	chr6:14877400-14880400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:14877400-14882800	Weak transcription	Lung	lung
44	chr6:14877400-14889000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr6:14877600-14878400	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr6:14877600-14878600	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr6:14877600-14878600	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr6:14877600-14878800	Enhancers	Primary T cells from cord blood	blood
49	chr6:14877600-14878800	Weak transcription	K562	blood
50	chr6:14877600-14880200	Weak transcription	Brain Anterior Caudate	brain

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