Variant report

Variant	rs9464725
Chromosome Location	chr6:14851366-14851367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14845916..14847475-chr6:14850133..14851997,2	MCF-7	breast:
2	chr6:14848163..14851630-chr6:14853306..14856689,6	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11968790	0.83[AMR][1000 genomes]
rs9296957	0.84[AFR][1000 genomes]
rs9464728	1.00[AMR][1000 genomes]
rs9464729	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs9464730	1.00[GIH][hapmap]
rs9476669	1.00[AMR][1000 genomes]
rs9476675	1.00[AMR][1000 genomes]
rs9476676	1.00[AMR][1000 genomes]
rs9476678	1.00[AMR][1000 genomes]
rs9476679	1.00[AMR][1000 genomes]
rs9476680	1.00[AMR][1000 genomes]
rs9476683	0.85[GIH][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14832200-14855400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:14847000-14855400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:14850000-14855400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:14850000-14857200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:14850200-14855000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:14850200-14855000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:14850200-14855200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:14850200-14857200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:14850400-14855200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:14850400-14857200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:14850400-14866200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:14851000-14851600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:14851000-14851600	Enhancers	NHDF-Ad	bronchial
14	chr6:14851000-14851600	Enhancers	Osteobl	bone
15	chr6:14851000-14855200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:14851200-14851600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:14851200-14851600	Enhancers	Fetal Stomach	stomach
18	chr6:14851200-14853000	Weak transcription	Right Atrium	heart
19	chr6:14851200-14853600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:14851200-14855400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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