Variant report

Variant	rs9476680
Chromosome Location	chr6:14887071-14887072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14886333..14888051-chr6:14888105..14890290,2	MCF-7	breast:
2	chr6:14872119..14873889-chr6:14887014..14889043,2	K562	blood:
3	chr6:14886246..14888120-chr6:15244325..15247107,2	MCF-7	breast:
4	chr6:14878630..14881043-chr6:14886019..14889778,3	K562	blood:
5	chr6:14887062..14891026-chr6:15088768..15091846,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction
ENSG00000234261	Chromatin interaction
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10085175	1.00[ASN][1000 genomes]
rs11968790	0.83[AMR][1000 genomes]
rs13437579	1.00[ASN][1000 genomes]
rs28444386	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28461820	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34060138	1.00[ASN][1000 genomes]
rs388183	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs446711	1.00[ASN][1000 genomes]
rs724700	1.00[ASN][1000 genomes]
rs9464725	1.00[AMR][1000 genomes]
rs9464728	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9464729	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9464730	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9464731	1.00[ASN][1000 genomes]
rs9464732	1.00[ASN][1000 genomes]
rs9464733	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9464734	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9476669	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476674	1.00[ASN][1000 genomes]
rs9476675	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476676	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476678	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476679	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476682	1.00[ASN][1000 genomes]
rs9476683	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9476684	1.00[ASN][1000 genomes]
rs9476685	1.00[ASN][1000 genomes]
rs9476686	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14877400-14889000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:14880800-14889000	Weak transcription	Spleen	Spleen
3	chr6:14881600-14888800	Weak transcription	A549	lung
4	chr6:14883200-14888400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:14883200-14888400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:14883200-14889200	Weak transcription	Small Intestine	intestine
7	chr6:14883600-14889000	Weak transcription	Stomach Mucosa	stomach
8	chr6:14883800-14888800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:14884400-14887200	Weak transcription	Right Ventricle	heart
10	chr6:14884600-14887600	Weak transcription	Psoas Muscle	Psoas
11	chr6:14884600-14889800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:14884800-14887800	Weak transcription	Left Ventricle	heart
13	chr6:14884800-14888200	Weak transcription	Adipose Nuclei	Adipose
14	chr6:14884800-14888200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:14884800-14890000	Weak transcription	K562	blood
16	chr6:14884800-14891600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:14884800-14892800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:14884800-14893800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:14885200-14893400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:14885200-14893600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:14886000-14890400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:14886200-14887800	Weak transcription	Right Atrium	heart
23	chr6:14886200-14888600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:14886200-14889000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:14886600-14888400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr6:14886600-14888400	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr6:14887000-14887200	Enhancers	Fetal Muscle Leg	muscle
28	chr6:14887000-14889800	Enhancers	Skeletal Muscle Male	skeletal muscle

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