Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14828090..14830220-chr6:14891865..14894171,2	MCF-7	breast:
2	chr6:14889124..14892994-chr6:15246955..15250888,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction
ENSG00000235488	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10085175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28444386	1.00[ASN][1000 genomes]
rs28461820	1.00[ASN][1000 genomes]
rs34060138	1.00[ASN][1000 genomes]
rs388183	1.00[ASN][1000 genomes]
rs446711	1.00[ASN][1000 genomes]
rs724700	1.00[ASN][1000 genomes]
rs9464728	1.00[ASN][1000 genomes]
rs9464729	1.00[ASN][1000 genomes]
rs9464730	1.00[ASN][1000 genomes]
rs9464731	1.00[ASN][1000 genomes]
rs9464732	1.00[ASN][1000 genomes]
rs9464733	1.00[ASN][1000 genomes]
rs9464734	1.00[ASN][1000 genomes]
rs9476669	1.00[ASN][1000 genomes]
rs9476674	1.00[ASN][1000 genomes]
rs9476675	1.00[ASN][1000 genomes]
rs9476676	1.00[ASN][1000 genomes]
rs9476678	1.00[ASN][1000 genomes]
rs9476679	1.00[ASN][1000 genomes]
rs9476680	1.00[ASN][1000 genomes]
rs9476682	1.00[ASN][1000 genomes]
rs9476683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476685	1.00[ASN][1000 genomes]
rs9476686	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14884800-14892800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:14884800-14893800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:14885200-14893400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:14885200-14893600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:14890600-14893400	Weak transcription	Lung	lung
6	chr6:14890800-14897000	Weak transcription	Stomach Mucosa	stomach
7	chr6:14890800-14897800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:14891800-14893000	Weak transcription	Esophagus	oesophagus
9	chr6:14891800-14893600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:14892400-14893600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:14892400-14893800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:14892600-14893400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:14892600-14893400	Enhancers	NHEK	skin
14	chr6:14892600-14893800	Enhancers	HMEC	breast

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