Variant report

Variant	rs10456198
Chromosome Location	chr6:14904669-14904670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10456197	1.00[EUR][1000 genomes]
rs10456765	1.00[EUR][1000 genomes]
rs12195833	1.00[EUR][1000 genomes]
rs12197756	1.00[EUR][1000 genomes]
rs12204187	1.00[EUR][1000 genomes]
rs12209534	1.00[EUR][1000 genomes]
rs12216386	1.00[EUR][1000 genomes]
rs12374643	1.00[EUR][1000 genomes]
rs446711	1.00[EUR][1000 genomes]
rs6937796	1.00[EUR][1000 genomes]
rs873254	1.00[EUR][1000 genomes]
rs9349960	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14894400-14912400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:14894400-14915800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:14902400-14906800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:14902600-14921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:14902800-14904800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:14902800-14904800	Enhancers	Fetal Intestine Small	intestine
7	chr6:14903400-14904800	Enhancers	Duodenum Mucosa	Duodenum
8	chr6:14903800-14904800	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr6:14904400-14905400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:14904400-14909400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:14904400-14909600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:14904400-14909800	Weak transcription	Primary B cells from cord blood	blood
13	chr6:14904400-14910200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:14904400-14910400	Weak transcription	Fetal Thymus	thymus
15	chr6:14904600-14905600	Weak transcription	Esophagus	oesophagus
16	chr6:14904600-14909600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:14904600-14911800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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