Variant report

Variant	rs10461303
Chromosome Location	chr4:68705473-68705474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:68689643..68691154-chr4:68704651..68706725,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10022223	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10030794	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10031870	0.91[ASN][1000 genomes]
rs10032416	0.99[ASN][1000 genomes]
rs10780054	0.91[CEU][hapmap];0.93[JPT][hapmap]
rs11131727	0.91[CEU][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11131728	0.89[ASN][1000 genomes]
rs12511895	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12511924	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13110293	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13136380	0.87[ASN][1000 genomes]
rs13142201	0.91[CEU][hapmap];0.92[CHD][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1371926	0.87[ASN][1000 genomes]
rs1371927	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1371928	0.92[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs1440734	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1486132	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1905985	0.91[ASN][1000 genomes]
rs1905986	0.91[ASN][1000 genomes]
rs1982778	0.89[ASN][1000 genomes]
rs2083529	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2083530	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2083531	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2099778	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2196965	0.91[ASN][1000 genomes]
rs2196966	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2218207	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2874031	0.91[CEU][hapmap];0.95[CHD][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4561973	0.91[ASN][1000 genomes]
rs58567891	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs58942018	0.92[ASN][1000 genomes]
rs6552117	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6552124	0.91[CEU][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67716342	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6828576	0.89[ASN][1000 genomes]
rs6834437	0.89[ASN][1000 genomes]
rs6835217	0.91[ASN][1000 genomes]
rs7654002	0.91[CEU][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7654481	0.89[ASN][1000 genomes]
rs7697526	0.90[ASN][1000 genomes]
rs974333	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9990528	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879214	chr4:68389841-68789778	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv829960	chr4:68649237-68809629	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3446954	chr4:68653705-68709553	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1007376	chr4:68693483-69008202	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10461303	ODAM	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:68699000-68719000	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links