Variant report

Variant	rs1371927
Chromosome Location	chr4:68715140-68715141
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:68713463..68715636-chr4:68717898..68719818,2	MCF-7	breast:
2	chr4:68713370..68716084-chr4:68718837..68721180,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10022223	0.92[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10030794	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10031870	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10032416	0.86[ASN][1000 genomes]
rs10461303	0.91[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10780054	0.83[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap]
rs11131727	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs12511895	0.84[EUR][1000 genomes]
rs12511924	0.84[EUR][1000 genomes]
rs13110293	0.90[EUR][1000 genomes]
rs13136380	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13142201	0.83[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs1348080	0.91[ASN][1000 genomes]
rs1371926	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1371928	0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs1440734	0.84[EUR][1000 genomes]
rs1486132	0.91[CEU][hapmap];0.84[CHB][hapmap];0.93[EUR][1000 genomes]
rs1905985	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1905986	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1982778	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2083529	0.90[EUR][1000 genomes]
rs2083530	0.90[EUR][1000 genomes]
rs2083531	0.90[EUR][1000 genomes]
rs2099778	0.90[EUR][1000 genomes]
rs2196965	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2196966	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2218207	0.90[EUR][1000 genomes]
rs2874031	0.83[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs4561973	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58567891	0.86[ASN][1000 genomes]
rs58942018	0.81[ASN][1000 genomes]
rs6552117	0.90[EUR][1000 genomes]
rs6552124	0.83[CEU][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67716342	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6828576	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6834437	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6835217	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7654002	0.83[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7654481	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7697526	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs974333	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9990528	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879214	chr4:68389841-68789778	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv829960	chr4:68649237-68809629	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1007376	chr4:68693483-69008202	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1371927	ODAM	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:68699000-68719000	Weak transcription	Esophagus	oesophagus
2	chr4:68712600-68717600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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