Variant report

Variant	rs4561973
Chromosome Location	chr4:68710220-68710221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10022223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10030794	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10031870	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10032416	0.90[ASN][1000 genomes]
rs10461303	0.91[ASN][1000 genomes]
rs11131727	0.82[ASN][1000 genomes]
rs11131728	0.82[ASN][1000 genomes]
rs12511895	0.82[ASN][1000 genomes]
rs12511924	0.82[ASN][1000 genomes]
rs13110293	0.81[ASN][1000 genomes]
rs13136380	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13142201	0.82[ASN][1000 genomes]
rs1348080	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1371926	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1371927	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1371928	0.84[ASN][1000 genomes]
rs1440734	0.82[ASN][1000 genomes]
rs1486132	0.82[ASN][1000 genomes]
rs1905985	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1905986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1982778	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2083529	0.81[ASN][1000 genomes]
rs2083530	0.81[ASN][1000 genomes]
rs2083531	0.81[ASN][1000 genomes]
rs2099778	0.81[ASN][1000 genomes]
rs2196965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218207	0.81[ASN][1000 genomes]
rs2874031	0.82[ASN][1000 genomes]
rs58567891	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58942018	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6552117	0.81[ASN][1000 genomes]
rs6552124	0.93[ASN][1000 genomes]
rs67716342	0.98[ASN][1000 genomes]
rs6828576	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6834437	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6835217	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654002	0.82[ASN][1000 genomes]
rs7654481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7697526	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs974333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9990528	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879214	chr4:68389841-68789778	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv829960	chr4:68649237-68809629	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1007376	chr4:68693483-69008202	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:68699000-68719000	Weak transcription	Esophagus	oesophagus

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