Variant report
Variant | rs1348080 |
---|---|
Chromosome Location | chr4:68715639-68715640 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:68713370..68716084-chr4:68718837..68721180,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10022223 | 0.91[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10030794 | 0.87[ASN][1000 genomes] |
rs10031870 | 0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10461303 | 0.91[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap] |
rs10780054 | 0.82[CEU][hapmap] |
rs11131727 | 0.82[CEU][hapmap] |
rs13136380 | 0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs13142201 | 0.82[CEU][hapmap] |
rs1371926 | 0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1371927 | 0.91[ASN][1000 genomes] |
rs1486132 | 0.91[CEU][hapmap] |
rs1905985 | 0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1905986 | 0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1982778 | 0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs2196965 | 0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2196966 | 0.91[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2874031 | 0.91[CEU][hapmap] |
rs4561973 | 0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs58567891 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs58942018 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs6552124 | 0.82[CEU][hapmap];0.80[ASN][1000 genomes] |
rs67716342 | 0.88[ASN][1000 genomes] |
rs6828576 | 0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6834437 | 0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6835217 | 0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7654002 | 0.91[CEU][hapmap] |
rs7654481 | 0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7697526 | 0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs974333 | 0.91[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9990528 | 0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv879214 | chr4:68389841-68789778 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
2 | nsv829960 | chr4:68649237-68809629 | Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv1007376 | chr4:68693483-69008202 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:68699000-68719000 | Weak transcription | Esophagus | oesophagus |
2 | chr4:68712600-68717600 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |