Variant report

Variant	rs10022223
Chromosome Location	chr4:68706863-68706864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:68698521..68700206-chr4:68706739..68709118,2	MCF-7	breast:
2	chr4:68703226..68705108-chr4:68706609..68708217,2	K562	blood:

Variant related genes	Relation type
ENSG00000153802	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10030794	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10031870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10032416	0.90[ASN][1000 genomes]
rs10461303	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10780054	0.93[JPT][hapmap]
rs11131727	0.82[ASN][1000 genomes]
rs11131728	0.82[ASN][1000 genomes]
rs12511895	0.82[ASN][1000 genomes]
rs12511924	0.82[ASN][1000 genomes]
rs13110293	0.81[ASN][1000 genomes]
rs13136380	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13142201	0.85[CHD][hapmap];0.82[ASN][1000 genomes]
rs1348080	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1371926	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1371927	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1371928	0.85[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1440734	0.82[ASN][1000 genomes]
rs1486132	0.84[CEU][hapmap];0.82[ASN][1000 genomes]
rs1905985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1905986	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1982778	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2083529	0.81[ASN][1000 genomes]
rs2083530	0.81[ASN][1000 genomes]
rs2083531	0.81[ASN][1000 genomes]
rs2099778	0.81[ASN][1000 genomes]
rs2196965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218207	0.81[ASN][1000 genomes]
rs2874031	0.87[CHD][hapmap];0.82[ASN][1000 genomes]
rs4561973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58567891	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58942018	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6552117	0.81[ASN][1000 genomes]
rs6552124	0.93[ASN][1000 genomes]
rs67716342	0.98[ASN][1000 genomes]
rs6828576	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6834437	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6835217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654002	0.87[CHD][hapmap];0.82[ASN][1000 genomes]
rs7654481	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7697526	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs974333	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9990528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879214	chr4:68389841-68789778	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv829960	chr4:68649237-68809629	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3446954	chr4:68653705-68709553	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1007376	chr4:68693483-69008202	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10022223	ODAM	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:68699000-68719000	Weak transcription	Esophagus	oesophagus

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