Variant report

Variant	rs10461985
Chromosome Location	chr5:37874409-37874410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13360677	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1423448	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs28733167	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910697	0.85[CEU][hapmap];0.81[YRI][hapmap]
rs2910747	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[EUR][1000 genomes]
rs2910749	0.81[EUR][1000 genomes]
rs2973107	0.84[EUR][1000 genomes]
rs2975100	0.87[TSI][hapmap];0.81[YRI][hapmap]
rs67473642	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv881401	chr5:37849688-37901408	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37867000-37875200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:37870000-37875000	Weak transcription	HMEC	breast
3	chr5:37870000-37875000	Weak transcription	NHEK	skin
4	chr5:37870000-37875400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:37871800-37874800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:37871800-37875200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:37871800-37875200	Weak transcription	Osteobl	bone
8	chr5:37871800-37875400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:37872000-37875000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:37872000-37875400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:37873400-37875200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr5:37874000-37875600	Enhancers	GM12878-XiMat	blood
13	chr5:37874000-37876200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:37874000-37876400	Weak transcription	Fetal Stomach	stomach
15	chr5:37874200-37874600	Weak transcription	NHDF-Ad	bronchial
16	chr5:37874400-37876800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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