Variant report

Variant	rs67473642
Chromosome Location	chr5:37876925-37876926
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10461985	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13360677	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1423448	0.84[EUR][1000 genomes]
rs28733167	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2910747	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2910749	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2973107	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv881401	chr5:37849688-37901408	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37875600-37888200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:37876000-37877400	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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