Variant report

Variant	rs2910747
Chromosome Location	chr5:37869699-37869700
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10461985	0.97[EUR][1000 genomes]
rs13360677	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1423448	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28733167	0.99[EUR][1000 genomes]
rs2910748	0.89[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs2910749	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2910757	0.81[EUR][1000 genomes]
rs2910759	0.82[EUR][1000 genomes]
rs2910760	0.81[EUR][1000 genomes]
rs2973107	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2973112	0.82[EUR][1000 genomes]
rs2973117	0.81[EUR][1000 genomes]
rs2975100	0.84[JPT][hapmap]
rs67473642	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv881401	chr5:37849688-37901408	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37867000-37875200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:37868200-37870600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:37868200-37870800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:37868600-37870600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:37868800-37872000	Enhancers	NHDF-Ad	bronchial
6	chr5:37869000-37872000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:37869400-37870000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:37869600-37870000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:37869600-37870000	Enhancers	HMEC	breast
10	chr5:37869600-37871800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links