Variant report

Variant	rs2973107
Chromosome Location	chr5:37868891-37868892
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10060017	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10461985	0.84[EUR][1000 genomes]
rs13360677	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1423448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2075680	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2075681	0.94[ASN][1000 genomes]
rs2366621	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28733167	0.85[EUR][1000 genomes]
rs2910692	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2910694	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2910697	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2910698	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2910699	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2910700	0.89[ASN][1000 genomes]
rs2910747	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2910748	0.88[AFR][1000 genomes]
rs2910749	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2910757	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2910759	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2910760	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2973035	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2973112	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2973117	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2973118	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2973119	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2973120	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2973121	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2973122	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2975100	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67473642	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv881401	chr5:37849688-37901408	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37867000-37869600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:37867000-37869600	Weak transcription	HMEC	breast
3	chr5:37867000-37875200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:37868200-37869600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:37868200-37870600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:37868200-37870800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:37868600-37870600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:37868800-37872000	Enhancers	NHDF-Ad	bronchial

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