Variant report

Variant	rs10464688
Chromosome Location	chr7:126669171-126669172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:126085913-126088095..7:126662926-126671620	K562	blood:

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10954142	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs11563304	0.85[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap]
rs11563356	0.85[CHB][hapmap]
rs11563358	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs11563361	0.85[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563510	0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11563730	0.82[CHB][hapmap]
rs11563742	0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs11563744	0.85[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap]
rs11563745	0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs11563776	1.00[YRI][hapmap]
rs11563791	0.85[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11563792	0.85[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11765785	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771611	0.85[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap]
rs11971261	0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12538500	0.82[CHB][hapmap]
rs12706758	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706759	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs13223635	0.82[CHB][hapmap]
rs13234354	0.82[CHB][hapmap]
rs13239456	0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs13239559	0.82[CHB][hapmap]
rs1419447	0.82[CHB][hapmap]
rs1468096	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1468097	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs17862281	0.85[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap]
rs17863206	0.85[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2023640	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs2188187	0.82[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2299524	0.85[CHB][hapmap];1.00[YRI][hapmap]
rs2299536	0.82[CHB][hapmap]
rs4728062	0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4728063	0.82[JPT][hapmap]
rs882894	0.85[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap]
rs916610	0.82[CHB][hapmap]
rs916611	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs916612	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs929172	0.85[CHB][hapmap]
rs953016	0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links