Variant report

Variant	rs12538500
Chromosome Location	chr7:126789945-126789946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10464688	0.82[CHB][hapmap]
rs1111183	0.88[CHB][hapmap]
rs11563356	1.00[CHB][hapmap]
rs12706761	0.88[CHB][hapmap]
rs13223635	1.00[CHB][hapmap]
rs13234354	1.00[CHB][hapmap];0.83[CHD][hapmap];0.85[MEX][hapmap]
rs13239559	1.00[CHB][hapmap];0.83[CHD][hapmap];0.85[MEX][hapmap]
rs1419442	0.88[CHB][hapmap]
rs1557644	0.88[CHB][hapmap]
rs1557645	0.88[CHB][hapmap]
rs2299531	0.86[CHB][hapmap]
rs2299536	1.00[CHB][hapmap];0.83[CHD][hapmap];0.85[MEX][hapmap]
rs4728065	0.88[CHB][hapmap]
rs916608	0.88[CHB][hapmap]
rs929172	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1027369	chr7:126772111-126798871	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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