Variant report

Variant	rs10468463
Chromosome Location	chr17:16849479-16849480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10468462	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12325872	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs12937629	0.88[ASN][1000 genomes]
rs12950077	0.85[EUR][1000 genomes]
rs34153813	0.96[EUR][1000 genomes]
rs34562485	0.85[EUR][1000 genomes]
rs34650767	0.82[EUR][1000 genomes]
rs34694042	0.82[EUR][1000 genomes]
rs34932194	0.85[EUR][1000 genomes]
rs35062843	0.85[EUR][1000 genomes]
rs35076010	0.96[EUR][1000 genomes]
rs35286584	0.85[EUR][1000 genomes]
rs35529291	0.85[EUR][1000 genomes]
rs35612151	0.85[EUR][1000 genomes]
rs35614113	0.85[EUR][1000 genomes]
rs35655892	0.85[EUR][1000 genomes]
rs35830162	0.82[EUR][1000 genomes]
rs3751990	0.90[JPT][hapmap]
rs4985783	0.92[ASN][1000 genomes]
rs71362291	0.85[EUR][1000 genomes]
rs71362292	0.85[EUR][1000 genomes]
rs7214221	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs7216399	0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs7218682	0.84[ASN][1000 genomes]
rs7222430	0.95[ASN][1000 genomes]
rs73980239	0.84[ASN][1000 genomes]
rs73980240	0.84[ASN][1000 genomes]
rs73980241	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv833379	chr17:16683585-16859539	Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1055688	chr17:16800788-16868860	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1058863	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv543227	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv907726	chr17:16821204-16875636	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16844200-16852000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr17:16846400-16850400	Enhancers	Brain Hippocampus Middle	brain
3	chr17:16846400-16851600	Enhancers	Brain Cingulate Gyrus	brain
4	chr17:16846600-16852000	Genic enhancers	Primary B cells from peripheral blood	blood
5	chr17:16847400-16850400	Genic enhancers	GM12878-XiMat	blood
6	chr17:16847800-16851600	Enhancers	Primary B cells from cord blood	blood
7	chr17:16848200-16849600	Enhancers	Pancreas	Pancrea
8	chr17:16848200-16849800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr17:16848600-16850400	Enhancers	Brain Angular Gyrus	brain
10	chr17:16848600-16851800	Enhancers	Brain Substantia Nigra	brain
11	chr17:16848800-16849600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr17:16848800-16849600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr17:16849000-16849800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr17:16849000-16849800	Enhancers	Brain Anterior Caudate	brain
15	chr17:16849200-16849600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr17:16849200-16849600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr17:16849200-16849600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr17:16849200-16849600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr17:16849400-16849600	Genic enhancers	Spleen	Spleen
20	chr17:16849400-16849800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr17:16849400-16850200	Weak transcription	A549	lung
22	chr17:16849400-16850600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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