Variant report

Variant	rs7216399
Chromosome Location	chr17:16856578-16856579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16854667..16857479-chr17:16858577..16860640,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10468462	0.95[ASN][1000 genomes]
rs10468463	0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs11078356	0.85[CEU][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs11078360	0.89[YRI][hapmap]
rs11651187	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs11652811	0.80[EUR][1000 genomes]
rs11652843	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs11654088	0.85[CEU][hapmap]
rs11654431	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs11656106	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12051900	0.80[YRI][hapmap]
rs12325872	0.82[ASN][1000 genomes]
rs12937629	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17793572	0.85[CEU][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs3751990	0.81[JPT][hapmap]
rs4343329	0.81[CEU][hapmap]
rs4517836	0.82[EUR][1000 genomes]
rs4985700	0.87[ASW][hapmap];0.91[LWK][hapmap];0.88[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4985724	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4985725	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4985735	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4985783	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58928848	0.81[EUR][1000 genomes]
rs6502540	0.83[EUR][1000 genomes]
rs7209074	0.84[CEU][hapmap]
rs7214221	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs7218682	0.82[ASN][1000 genomes]
rs7222430	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7223652	0.95[CEU][hapmap];0.94[GIH][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73980239	0.82[ASN][1000 genomes]
rs73980240	0.82[ASN][1000 genomes]
rs73980241	0.82[ASN][1000 genomes]
rs8072293	0.85[CEU][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs8075444	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8081126	0.85[CEU][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs9889948	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv833379	chr17:16683585-16859539	Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1055688	chr17:16800788-16868860	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1058863	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv543227	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv907726	chr17:16821204-16875636	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16852000-16857000	ZNF genes & repeats	GM12878-XiMat	blood
2	chr17:16852800-16857000	Weak transcription	Brain Hippocampus Middle	brain
3	chr17:16853000-16856800	Weak transcription	Primary B cells from cord blood	blood
4	chr17:16853000-16858800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr17:16855000-16856600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr17:16856000-16857800	Weak transcription	Spleen	Spleen
7	chr17:16856400-16860400	Genic enhancers	Primary B cells from peripheral blood	blood

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