Variant report

Variant	rs12325872
Chromosome Location	chr17:16850819-16850820
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10468462	0.86[ASN][1000 genomes]
rs10468463	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs11078360	0.88[YRI][hapmap];0.93[AFR][1000 genomes]
rs11078361	0.88[YRI][hapmap];0.93[AFR][1000 genomes]
rs12051726	0.88[YRI][hapmap];0.90[AFR][1000 genomes]
rs12051889	0.88[YRI][hapmap];0.90[AFR][1000 genomes]
rs12051890	0.90[AFR][1000 genomes]
rs12051892	0.90[AFR][1000 genomes]
rs12051899	0.87[YRI][hapmap];0.93[AFR][1000 genomes]
rs12051900	0.88[YRI][hapmap];0.93[AFR][1000 genomes]
rs12150243	0.92[AFR][1000 genomes]
rs34870066	0.90[AFR][1000 genomes]
rs35678976	0.93[AFR][1000 genomes]
rs4985783	0.82[ASN][1000 genomes]
rs56369903	0.94[ASN][1000 genomes]
rs66479858	0.90[AFR][1000 genomes]
rs66847673	0.90[AFR][1000 genomes]
rs67001256	0.90[AFR][1000 genomes]
rs7214221	1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216399	0.82[ASN][1000 genomes]
rs7218682	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222430	0.84[ASN][1000 genomes]
rs73980239	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73980240	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73980241	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8082017	0.87[YRI][hapmap];0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv833379	chr17:16683585-16859539	Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1055688	chr17:16800788-16868860	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1058863	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv543227	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv907726	chr17:16821204-16875636	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16844200-16852000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr17:16846400-16851600	Enhancers	Brain Cingulate Gyrus	brain
3	chr17:16846600-16852000	Genic enhancers	Primary B cells from peripheral blood	blood
4	chr17:16847800-16851600	Enhancers	Primary B cells from cord blood	blood
5	chr17:16848600-16851800	Enhancers	Brain Substantia Nigra	brain
6	chr17:16849600-16851600	Weak transcription	Spleen	Spleen
7	chr17:16849800-16851200	Weak transcription	Brain Anterior Caudate	brain
8	chr17:16849800-16851400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr17:16850400-16851200	Weak transcription	Brain Hippocampus Middle	brain
10	chr17:16850800-16851200	Genic enhancers	GM12878-XiMat	blood

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