Variant report

Variant	rs7218682
Chromosome Location	chr17:16860191-16860192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16854667..16857479-chr17:16858577..16860640,2	MCF-7	breast:
2	chr17:16858836..16860818-chr17:16864021..16866400,2	K562	blood:
3	chr17:16844584..16846721-chr17:16858506..16861138,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10468462	0.86[ASN][1000 genomes]
rs10468463	0.84[ASN][1000 genomes]
rs11078360	0.97[AFR][1000 genomes]
rs11078361	0.97[AFR][1000 genomes]
rs12051726	0.93[AFR][1000 genomes]
rs12051889	0.93[AFR][1000 genomes]
rs12051890	0.93[AFR][1000 genomes]
rs12051892	0.93[AFR][1000 genomes]
rs12051899	0.97[AFR][1000 genomes]
rs12051900	0.97[AFR][1000 genomes]
rs12150243	0.95[AFR][1000 genomes]
rs12325872	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34870066	0.93[AFR][1000 genomes]
rs35678976	0.97[AFR][1000 genomes]
rs4985783	0.82[ASN][1000 genomes]
rs56369903	0.94[ASN][1000 genomes]
rs66479858	0.93[AFR][1000 genomes]
rs66847673	0.93[AFR][1000 genomes]
rs67001256	0.93[AFR][1000 genomes]
rs7214221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216399	0.82[ASN][1000 genomes]
rs7222430	0.84[ASN][1000 genomes]
rs73980239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73980240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73980241	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8082017	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1055688	chr17:16800788-16868860	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1058863	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv543227	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv907726	chr17:16821204-16875636	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16856400-16860400	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr17:16859200-16862000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
3	chr17:16859400-16860400	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links