Variant report

Variant	rs10469619
Chromosome Location	chr2:9877055-9877056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:9855761..9857318-chr2:9876058..9878208,2	K562	blood:
2	chr2:9694952..9697993-chr2:9876014..9878927,3	MCF-7	breast:
3	chr2:9871478..9874528-chr2:9876144..9879356,3	K562	blood:

Variant related genes	Relation type
ENSG00000271855	Chromatin interaction
ENSG00000151694	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1004488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10172624	1.00[AMR][1000 genomes]
rs10185303	1.00[EUR][1000 genomes]
rs10188428	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10190680	1.00[AMR][1000 genomes]
rs10200454	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10208526	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11685143	1.00[EUR][1000 genomes]
rs11900302	1.00[EUR][1000 genomes]
rs11901478	1.00[EUR][1000 genomes]
rs13392859	1.00[EUR][1000 genomes]
rs13392861	1.00[EUR][1000 genomes]
rs13417294	1.00[EUR][1000 genomes]
rs13420034	1.00[EUR][1000 genomes]
rs16867063	1.00[EUR][1000 genomes]
rs16867103	1.00[EUR][1000 genomes]
rs16867145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4327210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56832685	1.00[EUR][1000 genomes]
rs57119165	1.00[EUR][1000 genomes]
rs58377484	1.00[EUR][1000 genomes]
rs59042599	1.00[EUR][1000 genomes]
rs59457002	1.00[EUR][1000 genomes]
rs60115192	1.00[EUR][1000 genomes]
rs6723929	1.00[AMR][1000 genomes]
rs6728922	1.00[AMR][1000 genomes]
rs73155171	1.00[EUR][1000 genomes]
rs73164230	1.00[EUR][1000 genomes]
rs73164231	1.00[EUR][1000 genomes]
rs73164234	1.00[EUR][1000 genomes]
rs73164238	1.00[EUR][1000 genomes]
rs73164239	1.00[EUR][1000 genomes]
rs73164242	1.00[EUR][1000 genomes]
rs73913171	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469405	chr2:9814374-9964947	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv580930	chr2:9814374-9964947	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1003026	chr2:9854939-10012516	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv470443	chr2:9857018-9975557	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1014911	chr2:9863969-9905959	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv873618	chr2:9870631-9919759	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv873619	chr2:9870631-9956981	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	esv3444702	chr2:9876876-9878974	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9875000-9879200	Enhancers	Primary T cells fromperipheralblood	blood
2	chr2:9875000-9879200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:9875000-9879400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:9875000-9879400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr2:9875200-9877400	Enhancers	HMEC	breast
6	chr2:9875200-9877600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:9875200-9877600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr2:9875200-9877800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:9875200-9878800	Weak transcription	Colon Smooth Muscle	Colon
10	chr2:9875200-9879000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr2:9875200-9879000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr2:9875200-9879000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr2:9875200-9879000	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr2:9875200-9879400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr2:9875200-9879400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr2:9875400-9879000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr2:9875400-9879200	Enhancers	Primary T cells from cord blood	blood
18	chr2:9875600-9877400	Enhancers	Thymus	Thymus
19	chr2:9875800-9877800	Enhancers	Fetal Thymus	thymus
20	chr2:9875800-9879200	Weak transcription	Esophagus	oesophagus
21	chr2:9876200-9878600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr2:9876400-9878800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:9876800-9878600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr2:9877000-9879000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr2:9877000-9879200	Enhancers	Fetal Muscle Leg	muscle

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