Variant report

Variant	rs16867103
Chromosome Location	chr2:9788466-9788467
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:9786319..9790295-chr2:9795169..9796873,3	K562	blood:
2	chr2:9777475..9780124-chr2:9787300..9789724,2	K562	blood:
3	chr2:9781325..9786143-chr2:9786474..9789625,5	K562	blood:
4	chr2:9787484..9789200-chr2:9888207..9889729,2	K562	blood:
5	chr2:9782654..9789334-chr2:9794560..9799702,7	MCF-7	breast:
6	chr2:9786319..9789288-chr2:9795169..9797264,3	K562	blood:
7	chr2:9769623..9772219-chr2:9787562..9790407,4	MCF-7	breast:
8	chr2:9787645..9790270-chr2:9840801..9843386,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IAH1-3	chr2:9788439-9789771	NONHSAT069062

No data

Variant related genes	Relation type
ENSG00000134308	Chromatin interaction
ENSG00000240687	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1004488	1.00[EUR][1000 genomes]
rs10185303	1.00[EUR][1000 genomes]
rs10188428	1.00[EUR][1000 genomes]
rs10200454	1.00[EUR][1000 genomes]
rs10208526	1.00[EUR][1000 genomes]
rs10469619	1.00[EUR][1000 genomes]
rs11685143	1.00[EUR][1000 genomes]
rs11900302	1.00[EUR][1000 genomes]
rs11901478	1.00[EUR][1000 genomes]
rs13392859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13392861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13417294	1.00[EUR][1000 genomes]
rs13420034	1.00[EUR][1000 genomes]
rs16867063	1.00[EUR][1000 genomes]
rs16867145	1.00[EUR][1000 genomes]
rs4327210	1.00[EUR][1000 genomes]
rs56832685	1.00[EUR][1000 genomes]
rs57119165	1.00[EUR][1000 genomes]
rs58377484	1.00[EUR][1000 genomes]
rs59042599	1.00[EUR][1000 genomes]
rs59457002	1.00[EUR][1000 genomes]
rs60115192	1.00[EUR][1000 genomes]
rs73155171	1.00[EUR][1000 genomes]
rs73164230	1.00[EUR][1000 genomes]
rs73164231	1.00[EUR][1000 genomes]
rs73164234	1.00[EUR][1000 genomes]
rs73164238	1.00[EUR][1000 genomes]
rs73164239	1.00[EUR][1000 genomes]
rs73164242	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580915	chr2:9308148-9844178	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1011802	chr2:9766171-9808284	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9779600-9789400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr2:9783200-9789200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr2:9784000-9792400	Weak transcription	Brain Substantia Nigra	brain
4	chr2:9785800-9789000	Weak transcription	Gastric	stomach
5	chr2:9786600-9788600	Weak transcription	Pancreas	Pancrea
6	chr2:9786600-9792400	Weak transcription	Spleen	Spleen
7	chr2:9786800-9792600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr2:9787000-9792400	Weak transcription	Brain Angular Gyrus	brain
9	chr2:9787200-9788600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:9787200-9792600	Weak transcription	Ovary	ovary
11	chr2:9787600-9790000	Enhancers	Thymus	Thymus
12	chr2:9787800-9790600	Enhancers	Fetal Thymus	thymus
13	chr2:9788000-9789200	Enhancers	Fetal Heart	heart
14	chr2:9788000-9789400	Bivalent Enhancer	HepG2	liver
15	chr2:9788000-9789600	Enhancers	Placenta Amnion	Placenta Amnion
16	chr2:9788000-9791000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr2:9788200-9791000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:9788400-9788600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr2:9788400-9788600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr2:9788400-9788600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr2:9788400-9788800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr2:9788400-9789200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr2:9788400-9789800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr2:9788400-9789800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:9788400-9790400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr2:9788400-9790800	Enhancers	H1 Cell Line	embryonic stem cell
27	chr2:9788400-9791000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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