Variant report

Variant	rs13392861
Chromosome Location	chr2:9787837-9787838
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:9786319..9790295-chr2:9795169..9796873,3	K562	blood:
2	chr2:9777475..9780124-chr2:9787300..9789724,2	K562	blood:
3	chr2:9781325..9786143-chr2:9786474..9789625,5	K562	blood:
4	chr2:9787484..9789200-chr2:9888207..9889729,2	K562	blood:
5	chr2:9782654..9789334-chr2:9794560..9799702,7	MCF-7	breast:
6	chr2:9786319..9789288-chr2:9795169..9797264,3	K562	blood:
7	chr2:9769623..9772219-chr2:9787562..9790407,4	MCF-7	breast:
8	chr2:9787645..9790270-chr2:9840801..9843386,2	K562	blood:
9	chr2:9767218..9769003-chr2:9785866..9787851,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1004488	1.00[EUR][1000 genomes]
rs10185303	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10188428	1.00[EUR][1000 genomes]
rs10200454	1.00[EUR][1000 genomes]
rs10208526	1.00[EUR][1000 genomes]
rs10469619	1.00[EUR][1000 genomes]
rs11685143	1.00[EUR][1000 genomes]
rs11900302	1.00[EUR][1000 genomes]
rs11901478	1.00[EUR][1000 genomes]
rs13392859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13417294	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13420034	1.00[EUR][1000 genomes]
rs16867063	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16867103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16867145	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4327210	1.00[EUR][1000 genomes]
rs56832685	1.00[EUR][1000 genomes]
rs57119165	1.00[EUR][1000 genomes]
rs58377484	1.00[EUR][1000 genomes]
rs59042599	1.00[EUR][1000 genomes]
rs59457002	1.00[EUR][1000 genomes]
rs60115192	1.00[EUR][1000 genomes]
rs73155171	1.00[EUR][1000 genomes]
rs73164230	1.00[EUR][1000 genomes]
rs73164231	1.00[EUR][1000 genomes]
rs73164234	1.00[EUR][1000 genomes]
rs73164238	1.00[EUR][1000 genomes]
rs73164239	1.00[EUR][1000 genomes]
rs73164242	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580915	chr2:9308148-9844178	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1011802	chr2:9766171-9808284	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv518363	chr2:9777229-9788315	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9778800-9788400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:9779600-9789400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr2:9780800-9788000	Weak transcription	Fetal Heart	heart
4	chr2:9783200-9788400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:9783200-9789200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:9784000-9792400	Weak transcription	Brain Substantia Nigra	brain
7	chr2:9785800-9789000	Weak transcription	Gastric	stomach
8	chr2:9786000-9788000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr2:9786600-9788400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:9786600-9788600	Weak transcription	Pancreas	Pancrea
11	chr2:9786600-9792400	Weak transcription	Spleen	Spleen
12	chr2:9786800-9792600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr2:9787000-9788400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr2:9787000-9792400	Weak transcription	Brain Angular Gyrus	brain
15	chr2:9787200-9788600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr2:9787200-9792600	Weak transcription	Ovary	ovary
17	chr2:9787600-9790000	Enhancers	Thymus	Thymus
18	chr2:9787800-9790600	Enhancers	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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