Variant report

Variant	rs4327210
Chromosome Location	chr2:9885966-9885967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:9877830..9880619-chr2:9884575..9886353,2	MCF-7	breast:
2	chr2:9877832..9879861-chr2:9884355..9886742,3	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1004488	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10172624	1.00[AMR][1000 genomes]
rs10185303	1.00[EUR][1000 genomes]
rs10188428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10190680	1.00[AMR][1000 genomes]
rs10200454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10208526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10469619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11685143	1.00[EUR][1000 genomes]
rs11900302	1.00[EUR][1000 genomes]
rs11901478	1.00[EUR][1000 genomes]
rs13392859	1.00[EUR][1000 genomes]
rs13392861	1.00[EUR][1000 genomes]
rs13417294	1.00[EUR][1000 genomes]
rs13420034	1.00[EUR][1000 genomes]
rs16867063	1.00[EUR][1000 genomes]
rs16867103	1.00[EUR][1000 genomes]
rs16867145	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56832685	1.00[EUR][1000 genomes]
rs57119165	1.00[EUR][1000 genomes]
rs58377484	1.00[EUR][1000 genomes]
rs59042599	1.00[EUR][1000 genomes]
rs59457002	1.00[EUR][1000 genomes]
rs60115192	1.00[EUR][1000 genomes]
rs6723929	1.00[AMR][1000 genomes]
rs6728922	1.00[AMR][1000 genomes]
rs73155171	1.00[EUR][1000 genomes]
rs73164230	1.00[EUR][1000 genomes]
rs73164231	1.00[EUR][1000 genomes]
rs73164234	1.00[EUR][1000 genomes]
rs73164238	1.00[EUR][1000 genomes]
rs73164239	1.00[EUR][1000 genomes]
rs73164242	1.00[EUR][1000 genomes]
rs73913171	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469405	chr2:9814374-9964947	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv580930	chr2:9814374-9964947	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1003026	chr2:9854939-10012516	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv470443	chr2:9857018-9975557	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1014911	chr2:9863969-9905959	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv873618	chr2:9870631-9919759	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv873619	chr2:9870631-9956981	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9880200-9892800	Weak transcription	Thymus	Thymus
2	chr2:9880200-9893200	Weak transcription	Right Atrium	heart
3	chr2:9884000-9886000	Enhancers	NHDF-Ad	bronchial
4	chr2:9884200-9886400	Enhancers	Pancreas	Pancrea
5	chr2:9884600-9886600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:9884800-9892600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:9885200-9886200	Weak transcription	Fetal Heart	heart
8	chr2:9885200-9888400	Weak transcription	Fetal Intestine Small	intestine
9	chr2:9885200-9891200	Weak transcription	Right Ventricle	heart
10	chr2:9885200-9891400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:9885200-9893000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr2:9885400-9887600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr2:9885400-9888600	Weak transcription	Fetal Muscle Leg	muscle
14	chr2:9885400-9888800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr2:9885400-9888800	Weak transcription	Hela-S3	cervix
16	chr2:9885400-9891000	Weak transcription	Psoas Muscle	Psoas
17	chr2:9885400-9893000	Weak transcription	Left Ventricle	heart
18	chr2:9885600-9886000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:9885600-9888200	Weak transcription	Fetal Intestine Large	intestine
20	chr2:9885600-9888400	Weak transcription	A549	lung
21	chr2:9885600-9888600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:9885600-9888600	Weak transcription	HSMM	muscle
23	chr2:9885600-9888800	Weak transcription	HMEC	breast
24	chr2:9885600-9889000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr2:9885600-9892600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr2:9885800-9886200	Enhancers	Spleen	Spleen
27	chr2:9885800-9887800	Enhancers	Fetal Muscle Trunk	muscle
28	chr2:9885800-9891000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr2:9885800-9891600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links