Variant report

Variant	rs10470022
Chromosome Location	chr20:41469433-41469434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11086852	0.85[CEU][hapmap];1.00[MEX][hapmap]
rs11696719	1.00[CEU][hapmap];0.87[GIH][hapmap];0.84[EUR][1000 genomes]
rs11698606	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11698607	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11698772	1.00[CEU][hapmap];0.87[GIH][hapmap];0.83[EUR][1000 genomes]
rs11699773	0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1535237	1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16987367	1.00[CEU][hapmap]
rs16987425	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2015675	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6030467	1.00[CEU][hapmap]
rs7261303	0.84[GIH][hapmap];0.81[AMR][1000 genomes]
rs7261359	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs7265982	1.00[CEU][hapmap]
rs7268984	0.81[GIH][hapmap];0.81[AMR][1000 genomes]
rs7273962	1.00[CEU][hapmap]
rs8118654	0.87[ASN][1000 genomes]
rs962251	1.00[CEU][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058990	chr20:41289969-41543912	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544277	chr20:41289969-41543912	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1063450	chr20:41409901-41880620	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1060690	chr20:41413369-41851935	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1066088	chr20:41417205-42060036	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41466400-41475600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:41469400-41469600	Enhancers	Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links