Variant report

Variant	rs7265982
Chromosome Location	chr20:41409064-41409065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10470022	1.00[CEU][hapmap]
rs10485697	0.83[CHD][hapmap]
rs11086852	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs11696719	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11697557	0.93[ASN][1000 genomes]
rs11698606	1.00[CEU][hapmap]
rs11698607	1.00[CEU][hapmap]
rs11698772	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs16987367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16987425	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs6016891	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6030465	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6030467	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6030469	0.80[GIH][hapmap]
rs7261303	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7261359	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7268984	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7273962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs962251	1.00[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915994	chr20:41180550-41464507	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1058990	chr20:41289969-41543912	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544277	chr20:41289969-41543912	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41405800-41409600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:41407400-41420800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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