Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:41404898..41407783-chr20:41407973..41409505,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10470022	1.00[CEU][hapmap]
rs10485697	0.85[YRI][hapmap]
rs11086852	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs11696719	1.00[CEU][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11697557	0.93[ASN][1000 genomes]
rs11698606	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11698607	1.00[CEU][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11698772	1.00[CEU][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11699773	0.85[YRI][hapmap]
rs16987425	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs17811425	0.87[YRI][hapmap]
rs2015675	0.80[AMR][1000 genomes]
rs6016891	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6030465	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6030467	1.00[CEU][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6030469	0.90[AMR][1000 genomes]
rs7261303	1.00[JPT][hapmap]
rs7261359	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7265982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7268984	1.00[JPT][hapmap]
rs7273962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs962251	1.00[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915994	chr20:41180550-41464507	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1058990	chr20:41289969-41543912	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544277	chr20:41289969-41543912	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41405800-41409600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:41407000-41407400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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