Variant report

Variant	rs10470199
Chromosome Location	chr21:17842409-17842410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17840645..17843394-chr21:17845243..17848250,3	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10470096	1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10470198	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10470200	0.88[ASN][1000 genomes]
rs13433398	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13433444	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039242	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2039243	1.00[ASN][1000 genomes]
rs2039244	1.00[ASN][1000 genomes]
rs2823832	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2823833	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2823836	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2823837	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2823878	1.00[JPT][hapmap]
rs28407677	0.82[ASN][1000 genomes]
rs28415058	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28433186	1.00[ASN][1000 genomes]
rs28526796	1.00[ASN][1000 genomes]
rs28608983	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28643005	1.00[ASN][1000 genomes]
rs28648637	1.00[ASN][1000 genomes]
rs28690432	1.00[ASN][1000 genomes]
rs28840743	0.88[ASN][1000 genomes]
rs28844023	0.82[ASN][1000 genomes]
rs28858813	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28896613	0.82[ASN][1000 genomes]
rs2896760	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs57055406	0.88[ASN][1000 genomes]
rs57454141	1.00[EUR][1000 genomes]
rs57659737	0.88[ASN][1000 genomes]
rs58225448	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58236716	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59574854	1.00[EUR][1000 genomes]
rs59656923	1.00[EUR][1000 genomes]
rs59959567	0.88[ASN][1000 genomes]
rs60925168	0.88[ASN][1000 genomes]
rs61549904	1.00[ASN][1000 genomes]
rs7280831	1.00[EUR][1000 genomes]
rs73363422	0.88[ASN][1000 genomes]
rs73363426	0.88[ASN][1000 genomes]
rs73380342	1.00[ASN][1000 genomes]
rs73891588	1.00[EUR][1000 genomes]
rs73891591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73891592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73893713	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73893743	1.00[EUR][1000 genomes]
rs8132964	1.00[ASN][1000 genomes]
rs9305766	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9305767	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9305768	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9305769	1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9974386	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9974447	0.82[ASN][1000 genomes]
rs9974519	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9975047	0.88[ASN][1000 genomes]
rs9975202	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9975349	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9975582	0.88[ASN][1000 genomes]
rs9975640	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9976077	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9976648	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9976729	0.82[ASN][1000 genomes]
rs9976887	1.00[ASN][1000 genomes]
rs9977372	0.88[ASN][1000 genomes]
rs9977640	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9977666	0.82[ASN][1000 genomes]
rs9978828	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9979222	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9979766	0.88[ASN][1000 genomes]
rs9979904	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9980133	1.00[ASN][1000 genomes]
rs9980149	0.94[ASN][1000 genomes]
rs9980549	0.82[ASN][1000 genomes]
rs9980810	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9980959	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9981432	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9981465	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9981657	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9981699	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9982188	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9982511	1.00[ASN][1000 genomes]
rs9982641	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9982850	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9983223	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9983295	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9983298	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs9983466	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9984183	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9984263	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9984639	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9984788	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9985004	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9985090	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9985151	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
2	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
3	nsv913416	chr21:17728224-17863882	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17829000-17843600	Weak transcription	Brain Hippocampus Middle	brain
2	chr21:17830400-17845600	Weak transcription	Right Atrium	heart
3	chr21:17835400-17846400	Weak transcription	Left Ventricle	heart
4	chr21:17836400-17846200	Weak transcription	Fetal Muscle Leg	muscle
5	chr21:17836800-17848400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr21:17836800-17848600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr21:17837400-17848800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr21:17838000-17846200	Weak transcription	Ovary	ovary
9	chr21:17838000-17850200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr21:17839400-17843200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr21:17840400-17848200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr21:17840400-17860800	Weak transcription	HUVEC	blood vessel
13	chr21:17841000-17846200	Weak transcription	Osteobl	bone
14	chr21:17841000-17881800	Weak transcription	Hela-S3	cervix
15	chr21:17841400-17848200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr21:17842200-17843000	Enhancers	Psoas Muscle	Psoas
17	chr21:17842200-17843400	Weak transcription	Fetal Heart	heart
18	chr21:17842200-17843400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr21:17842200-17843600	Enhancers	Aorta	Aorta

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