Variant report

Variant	rs9977640
Chromosome Location	chr21:17868288-17868289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10470096	0.82[ASN][1000 genomes]
rs10470198	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10470199	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10470200	0.94[AFR][1000 genomes]
rs13433398	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13433444	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2039242	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2039243	0.82[ASN][1000 genomes]
rs2039244	0.82[ASN][1000 genomes]
rs2823832	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2823833	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2823836	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2823837	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2823875	1.00[CHB][hapmap]
rs2823878	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28407677	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28415058	0.82[ASN][1000 genomes]
rs28433186	0.82[ASN][1000 genomes]
rs28526796	0.82[ASN][1000 genomes]
rs28608983	0.82[ASN][1000 genomes]
rs28643005	0.82[ASN][1000 genomes]
rs28648637	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28690432	0.82[ASN][1000 genomes]
rs28844023	1.00[ASN][1000 genomes]
rs28896613	1.00[ASN][1000 genomes]
rs2896760	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs58225448	0.82[ASN][1000 genomes]
rs58236716	0.82[ASN][1000 genomes]
rs61549904	0.82[ASN][1000 genomes]
rs7282654	1.00[CHB][hapmap]
rs73380342	0.82[ASN][1000 genomes]
rs73891591	0.82[ASN][1000 genomes]
rs73891592	0.82[ASN][1000 genomes]
rs73893713	0.82[ASN][1000 genomes]
rs8132964	0.82[ASN][1000 genomes]
rs9305766	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9305767	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9305768	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9305769	0.82[ASN][1000 genomes]
rs9974386	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9974447	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9974519	0.82[ASN][1000 genomes]
rs9975202	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9975349	1.00[JPT][hapmap]
rs9975640	0.82[ASN][1000 genomes]
rs9976077	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9976648	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9976729	1.00[ASN][1000 genomes]
rs9976887	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9977666	1.00[ASN][1000 genomes]
rs9978828	0.82[ASN][1000 genomes]
rs9979222	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9979766	0.94[AFR][1000 genomes]
rs9980133	0.82[ASN][1000 genomes]
rs9980149	0.87[ASN][1000 genomes]
rs9980549	1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9980810	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9980910	0.87[ASN][1000 genomes]
rs9980959	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9981432	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9981465	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9981657	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9981699	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9982188	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9982511	0.82[ASN][1000 genomes]
rs9982641	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9982850	0.82[ASN][1000 genomes]
rs9983223	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9983295	0.82[ASN][1000 genomes]
rs9983298	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9983466	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9984183	0.82[ASN][1000 genomes]
rs9984263	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9984639	1.00[JPT][hapmap]
rs9984788	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9985004	0.82[ASN][1000 genomes]
rs9985090	1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
2	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17841000-17881800	Weak transcription	Hela-S3	cervix
2	chr21:17860600-17871600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr21:17860800-17872800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr21:17861600-17868400	Weak transcription	HUVEC	blood vessel
5	chr21:17861600-17872200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr21:17865000-17875600	Weak transcription	Psoas Muscle	Psoas
7	chr21:17865400-17872600	Weak transcription	Brain Anterior Caudate	brain
8	chr21:17866800-17878200	Weak transcription	Ovary	ovary

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