Variant report

Variant	rs10477473
Chromosome Location	chr5:111204946-111204947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10036670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10045343	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10054939	1.00[ASN][1000 genomes]
rs10062983	1.00[ASN][1000 genomes]
rs10068091	1.00[ASN][1000 genomes]
rs10075129	0.96[AMR][1000 genomes]
rs10075532	1.00[ASN][1000 genomes]
rs10075625	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078382	0.92[AMR][1000 genomes]
rs11742651	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes]
rs11750123	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11949783	1.00[ASN][1000 genomes]
rs154082	1.00[CHB][hapmap]
rs17494279	0.96[AMR][1000 genomes]
rs28575609	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv882712	chr5:111116271-111233084	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111196000-111205600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:111196200-111205200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:111201800-111205200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:111201800-111205200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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