Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10036670	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10045343	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10054939	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10060791	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10062983	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10068091	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10075532	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10477473	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11738263	1.00[AMR][1000 genomes]
rs11738364	0.83[AMR][1000 genomes]
rs11742651	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs11745819	1.00[AMR][1000 genomes]
rs11745837	1.00[AMR][1000 genomes]
rs11750123	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949783	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1493455	1.00[AMR][1000 genomes]
rs1494586	0.90[AMR][1000 genomes]
rs154082	1.00[CHB][hapmap]
rs28575609	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60643360	0.90[AMR][1000 genomes]
rs6862840	0.90[AMR][1000 genomes]
rs6897269	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs73225639	0.90[AMR][1000 genomes]
rs73225643	0.90[AMR][1000 genomes]
rs73225644	0.90[AMR][1000 genomes]
rs73227423	0.83[AMR][1000 genomes]
rs7705253	0.81[AMR][1000 genomes]
rs7709342	0.90[AMR][1000 genomes]
rs7719309	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv882712	chr5:111116271-111233084	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111214600-111216600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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