Variant report

Variant	rs11738364
Chromosome Location	chr5:111348335-111348336
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10060791	0.83[AMR][1000 genomes]
rs10075625	0.83[AMR][1000 genomes]
rs11738263	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11745819	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11745837	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11960552	1.00[EUR][1000 genomes]
rs1389310	1.00[EUR][1000 genomes]
rs1389311	1.00[EUR][1000 genomes]
rs1389312	1.00[EUR][1000 genomes]
rs1493455	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1494586	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57650449	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57696610	0.89[EUR][1000 genomes]
rs60643360	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6862840	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73225639	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73225643	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73225644	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73227423	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7709342	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7719309	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	esv2829846	chr5:111341445-111435769	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111341600-111349200	Weak transcription	Adipose Nuclei	Adipose
2	chr5:111343600-111349400	Weak transcription	Osteobl	bone
3	chr5:111346600-111348400	Enhancers	Fetal Stomach	stomach
4	chr5:111346600-111349200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:111347200-111348400	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr5:111347200-111351000	Enhancers	Fetal Lung	lung
7	chr5:111347200-111351200	Enhancers	Colon Smooth Muscle	Colon
8	chr5:111347400-111348400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:111347400-111348600	Enhancers	Stomach Smooth Muscle	stomach
10	chr5:111347600-111348400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:111347600-111348600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:111347600-111348800	Enhancers	NH-A	brain
13	chr5:111347800-111348400	Enhancers	Fetal Brain Male	brain
14	chr5:111347800-111349000	Enhancers	Fetal Heart	heart
15	chr5:111348000-111348400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr5:111348000-111348800	Weak transcription	Brain Germinal Matrix	brain
17	chr5:111348000-111349200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:111348000-111349200	Weak transcription	Stomach Mucosa	stomach
19	chr5:111348000-111349200	Weak transcription	NHLF	lung
20	chr5:111348000-111349400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:111348000-111350000	Weak transcription	Fetal Brain Female	brain
22	chr5:111348200-111349200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:111348200-111349200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:111348200-111349200	Weak transcription	NHDF-Ad	bronchial
25	chr5:111348200-111350400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr5:111348200-111350800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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