Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11738263	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11738364	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11745819	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745837	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960552	0.98[EUR][1000 genomes]
rs1389310	0.98[EUR][1000 genomes]
rs1389311	0.98[EUR][1000 genomes]
rs1389312	0.98[EUR][1000 genomes]
rs1493455	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1494586	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57696610	0.87[EUR][1000 genomes]
rs60643360	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6862840	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225639	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225643	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225644	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225647	1.00[ASN][1000 genomes]
rs73227423	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7704654	1.00[ASN][1000 genomes]
rs7709342	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719309	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111329200-111332800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:111331400-111332800	Enhancers	NH-A	brain
3	chr5:111331400-111333200	Enhancers	HSMM	muscle
4	chr5:111331400-111336200	Enhancers	NHLF	lung
5	chr5:111331600-111332200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:111331600-111338400	Enhancers	Muscle Satellite Cultured Cells	--

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