Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10060791	0.83[AMR][1000 genomes]
rs10075625	0.83[AMR][1000 genomes]
rs11738263	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11738364	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11745819	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745837	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960552	0.98[EUR][1000 genomes]
rs1389310	0.98[EUR][1000 genomes]
rs1389311	0.98[EUR][1000 genomes]
rs1389312	0.98[EUR][1000 genomes]
rs1493455	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1494586	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57650449	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57696610	0.87[EUR][1000 genomes]
rs60643360	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6862840	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225639	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225643	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225644	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225647	1.00[ASN][1000 genomes]
rs7704654	1.00[ASN][1000 genomes]
rs7709342	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719309	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111331400-111333200	Enhancers	HSMM	muscle
2	chr5:111331400-111336200	Enhancers	NHLF	lung
3	chr5:111331600-111338400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:111331800-111333000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:111332200-111333000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:111332400-111333200	Enhancers	GM12878-XiMat	blood
7	chr5:111332400-111335000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:111332400-111336200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:111332400-111336400	Enhancers	Osteobl	bone
10	chr5:111332400-111337200	Enhancers	NHDF-Ad	bronchial
11	chr5:111332600-111333000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:111332600-111335200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:111332600-111335600	Enhancers	NHEK	skin
14	chr5:111332800-111333200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:111332800-111333200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:111332800-111333200	Flanking Active TSS	NH-A	brain
17	chr5:111332800-111333400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:111332800-111335200	Enhancers	HMEC	breast
19	chr5:111332800-111335400	Enhancers	HSMMtube	muscle

Quick Search: