Variant report

Variant	rs11745819
Chromosome Location	chr5:111261603-111261604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10045343	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10060791	1.00[AMR][1000 genomes]
rs10075625	1.00[AMR][1000 genomes]
rs10078382	1.00[ASN][1000 genomes]
rs11738263	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11738364	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11745837	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960552	0.85[EUR][1000 genomes]
rs1389310	0.85[EUR][1000 genomes]
rs1389311	0.85[EUR][1000 genomes]
rs1389312	0.85[EUR][1000 genomes]
rs1493455	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1494586	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57650449	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60643360	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs664517	0.82[EUR][1000 genomes]
rs6862840	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6897269	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs73225635	0.82[EUR][1000 genomes]
rs73225639	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225643	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225644	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225647	1.00[ASN][1000 genomes]
rs73227423	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7704654	1.00[ASN][1000 genomes]
rs7705253	0.81[AMR][1000 genomes]
rs7709342	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719309	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111256800-111264800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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