Variant report

Variant	rs6897269
Chromosome Location	chr5:111137708-111137709
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10045343	1.00[JPT][hapmap]
rs10060791	0.82[AMR][1000 genomes]
rs10075129	0.96[EUR][1000 genomes]
rs10075625	0.82[AMR][1000 genomes]
rs10078382	0.96[EUR][1000 genomes]
rs11738263	0.82[AMR][1000 genomes]
rs11742651	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs11745819	0.82[AMR][1000 genomes]
rs11745837	0.82[AMR][1000 genomes]
rs11750123	0.86[EUR][1000 genomes]
rs1493455	0.82[AMR][1000 genomes]
rs17494279	0.81[EUR][1000 genomes]
rs7705253	0.88[AMR][1000 genomes]
rs7719309	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv882710	chr5:111103258-111168550	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv882711	chr5:111116271-111185325	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv882712	chr5:111116271-111233084	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111136000-111138600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:111136200-111137800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:111136200-111138200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:111136600-111138000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:111137000-111137800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:111137200-111138400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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