Variant report
| Variant | rs7705253 |
|---|---|
| Chromosome Location | chr5:111147465-111147466 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:111145529..111147613-chr5:111148768..111151430,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs1003272 | 0.86[ASN][1000 genomes] |
| rs10060791 | 0.81[AMR][1000 genomes] |
| rs10075625 | 0.81[AMR][1000 genomes] |
| rs11738263 | 0.81[AMR][1000 genomes] |
| rs11745819 | 0.81[AMR][1000 genomes] |
| rs11745837 | 0.81[AMR][1000 genomes] |
| rs11749310 | 0.85[ASN][1000 genomes] |
| rs11750123 | 0.80[EUR][1000 genomes] |
| rs13360997 | 0.85[ASN][1000 genomes] |
| rs1493455 | 0.81[AMR][1000 genomes] |
| rs17133824 | 0.87[ASN][1000 genomes] |
| rs17133845 | 0.87[ASN][1000 genomes] |
| rs17133847 | 0.87[ASN][1000 genomes] |
| rs17133862 | 0.82[ASN][1000 genomes] |
| rs17133873 | 0.84[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs17133879 | 0.89[CHB][hapmap];0.92[JPT][hapmap] |
| rs17133882 | 0.84[CHB][hapmap];0.92[JPT][hapmap] |
| rs34691528 | 0.87[ASN][1000 genomes] |
| rs4404725 | 0.89[ASN][1000 genomes] |
| rs4495228 | 0.87[ASN][1000 genomes] |
| rs56243059 | 0.81[ASN][1000 genomes] |
| rs56405886 | 0.81[ASN][1000 genomes] |
| rs57227445 | 0.81[ASN][1000 genomes] |
| rs57342469 | 0.94[ASN][1000 genomes] |
| rs58429198 | 0.84[ASN][1000 genomes] |
| rs59874488 | 0.97[ASN][1000 genomes] |
| rs60095412 | 0.80[ASN][1000 genomes] |
| rs6594547 | 0.94[ASN][1000 genomes] |
| rs6882628 | 0.83[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs6897269 | 0.88[AMR][1000 genomes] |
| rs73787704 | 0.81[ASN][1000 genomes] |
| rs73787708 | 0.82[ASN][1000 genomes] |
| rs7701160 | 0.97[ASN][1000 genomes] |
| rs7706739 | 0.97[ASN][1000 genomes] |
| rs7708380 | 0.94[ASN][1000 genomes] |
| rs7708790 | 0.87[ASN][1000 genomes] |
| rs7710698 | 0.83[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs7719309 | 0.81[AMR][1000 genomes] |
| rs7719956 | 0.94[ASN][1000 genomes] |
| rs7723663 | 0.94[ASN][1000 genomes] |
| rs7728161 | 0.82[ASN][1000 genomes] |
| rs7737873 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv599367 | chr5:110924280-111602713 | Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv882710 | chr5:111103258-111168550 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv882711 | chr5:111116271-111185325 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv882712 | chr5:111116271-111233084 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:111146200-111151400 | Weak transcription | Liver | Liver |
