Variant report

Variant	rs56243059
Chromosome Location	chr5:111205439-111205440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111200093..111201635-chr5:111204683..111206934,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1003272	0.92[ASN][1000 genomes]
rs10515435	0.82[ASN][1000 genomes]
rs11749310	0.85[ASN][1000 genomes]
rs13360997	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17133824	0.93[ASN][1000 genomes]
rs17133845	0.93[ASN][1000 genomes]
rs17133847	0.93[ASN][1000 genomes]
rs17133862	0.88[ASN][1000 genomes]
rs17133873	0.86[ASN][1000 genomes]
rs17133879	0.84[ASN][1000 genomes]
rs17133882	0.85[ASN][1000 genomes]
rs17133892	0.82[ASN][1000 genomes]
rs1864136	0.81[ASN][1000 genomes]
rs34691528	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4404725	0.89[ASN][1000 genomes]
rs4495228	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56405886	0.89[ASN][1000 genomes]
rs57227445	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57342469	0.83[ASN][1000 genomes]
rs58429198	0.89[ASN][1000 genomes]
rs59874488	0.83[ASN][1000 genomes]
rs60095412	0.86[ASN][1000 genomes]
rs61169291	0.81[ASN][1000 genomes]
rs657736	0.83[ASN][1000 genomes]
rs6594547	0.83[ASN][1000 genomes]
rs6882628	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73787704	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73787708	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7701160	0.83[ASN][1000 genomes]
rs7705253	0.81[ASN][1000 genomes]
rs7706739	0.83[ASN][1000 genomes]
rs7708380	0.84[ASN][1000 genomes]
rs7708790	0.93[ASN][1000 genomes]
rs7710698	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7719956	0.86[ASN][1000 genomes]
rs7723663	0.84[ASN][1000 genomes]
rs7728161	0.88[ASN][1000 genomes]
rs7737873	0.86[ASN][1000 genomes]
rs967985	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv882712	chr5:111116271-111233084	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111196000-111205600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:111205000-111205800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:111205200-111205800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:111205200-111205800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:111205200-111205800	Enhancers	NHDF-Ad	bronchial
6	chr5:111205200-111206000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:111205400-111206000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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