Variant report

Variant	rs17133824
Chromosome Location	chr5:111197960-111197961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111197196..111199957-chr5:111200495..111202978,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1003272	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10515435	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11749310	0.92[ASN][1000 genomes]
rs13360997	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17133737	1.00[EUR][1000 genomes]
rs17133745	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17133845	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133862	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17133873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17133879	0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs17133882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17133892	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1864136	0.87[ASN][1000 genomes]
rs34691528	0.83[ASN][1000 genomes]
rs4404725	0.86[ASN][1000 genomes]
rs4495228	0.83[ASN][1000 genomes]
rs506401	1.00[EUR][1000 genomes]
rs56243059	0.93[ASN][1000 genomes]
rs56405886	0.89[ASN][1000 genomes]
rs57227445	0.93[ASN][1000 genomes]
rs57342469	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs575328	1.00[EUR][1000 genomes]
rs58429198	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59874488	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60095412	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs605747	1.00[EUR][1000 genomes]
rs61169291	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs641552	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs649429	0.82[EUR][1000 genomes]
rs657736	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6594547	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6882628	0.88[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs73787704	0.93[ASN][1000 genomes]
rs73787708	0.94[ASN][1000 genomes]
rs73787719	0.81[ASN][1000 genomes]
rs7701160	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7705253	0.87[ASN][1000 genomes]
rs7706739	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7708380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7708790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710698	0.94[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs7719956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7723663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7728161	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7737873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs967985	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv882712	chr5:111116271-111233084	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111190200-111204600	Weak transcription	NHLF	lung
2	chr5:111193200-111198000	Weak transcription	Right Atrium	heart
3	chr5:111195600-111198000	Weak transcription	Left Ventricle	heart
4	chr5:111196000-111205600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:111196200-111198000	Weak transcription	Adipose Nuclei	Adipose
6	chr5:111196200-111205200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:111196400-111198000	Weak transcription	Fetal Heart	heart
8	chr5:111196400-111201000	Weak transcription	Osteobl	bone
9	chr5:111197800-111198000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:111197800-111198200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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