Variant report

Variant	rs59874488
Chromosome Location	chr5:111148945-111148946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111145529..111147613-chr5:111148768..111151430,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1003272	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10515435	1.00[EUR][1000 genomes]
rs11749310	0.82[ASN][1000 genomes]
rs13360997	0.87[ASN][1000 genomes]
rs17133737	1.00[EUR][1000 genomes]
rs17133745	1.00[EUR][1000 genomes]
rs17133824	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17133845	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17133847	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17133862	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17133873	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17133882	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17133892	1.00[EUR][1000 genomes]
rs34691528	0.89[ASN][1000 genomes]
rs4404725	0.92[ASN][1000 genomes]
rs4495228	0.89[ASN][1000 genomes]
rs506401	1.00[EUR][1000 genomes]
rs56243059	0.83[ASN][1000 genomes]
rs57227445	0.83[ASN][1000 genomes]
rs57342469	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs575328	1.00[EUR][1000 genomes]
rs58429198	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60095412	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs605747	1.00[EUR][1000 genomes]
rs61169291	1.00[EUR][1000 genomes]
rs641552	1.00[EUR][1000 genomes]
rs649429	0.82[EUR][1000 genomes]
rs657736	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6594547	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6882628	0.90[ASN][1000 genomes]
rs73223683	0.83[AFR][1000 genomes]
rs73787704	0.83[ASN][1000 genomes]
rs73787708	0.84[ASN][1000 genomes]
rs7701160	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705253	0.97[ASN][1000 genomes]
rs7706739	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708380	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7708790	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7710698	0.90[ASN][1000 genomes]
rs7719956	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7723663	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7728161	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7737873	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv882710	chr5:111103258-111168550	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv882711	chr5:111116271-111185325	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv882712	chr5:111116271-111233084	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111146200-111151400	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links