Variant report

Variant	rs17133873
Chromosome Location	chr5:111245497-111245498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:111245276-111245795	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr5:111245332-111245723	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
NREP-AS1	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1003272	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10515435	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11749310	0.95[ASN][1000 genomes]
rs12520499	0.81[JPT][hapmap]
rs13360997	0.90[ASN][1000 genomes]
rs17133737	1.00[EUR][1000 genomes]
rs17133745	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17133824	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17133845	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17133847	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17133862	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17133879	0.94[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs17133882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17133892	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1864136	0.87[ASN][1000 genomes]
rs506401	1.00[EUR][1000 genomes]
rs56243059	0.86[ASN][1000 genomes]
rs56405886	0.91[ASN][1000 genomes]
rs57227445	0.86[ASN][1000 genomes]
rs57342469	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs575328	1.00[EUR][1000 genomes]
rs58429198	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59874488	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60095412	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs605747	1.00[EUR][1000 genomes]
rs61169291	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs641552	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes]
rs649429	0.82[EUR][1000 genomes]
rs657736	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6594547	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6882628	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs73787704	0.86[ASN][1000 genomes]
rs73787708	0.87[ASN][1000 genomes]
rs73787719	0.85[ASN][1000 genomes]
rs7701160	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7705253	0.80[ASN][1000 genomes]
rs7706739	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7708380	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7708790	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7710698	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs7719956	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7723663	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7728161	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7737873	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs967985	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111244200-111246000	Enhancers	Fetal Heart	heart
2	chr5:111244800-111245600	Enhancers	Fetal Lung	lung

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