Variant report

Variant	rs57342469
Chromosome Location	chr5:111181346-111181347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1003272	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10515435	1.00[EUR][1000 genomes]
rs11749310	0.82[ASN][1000 genomes]
rs13360997	0.87[ASN][1000 genomes]
rs17133737	1.00[EUR][1000 genomes]
rs17133745	1.00[EUR][1000 genomes]
rs17133824	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17133845	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17133847	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17133862	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17133873	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17133882	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17133892	1.00[EUR][1000 genomes]
rs34691528	0.91[ASN][1000 genomes]
rs4404725	0.94[ASN][1000 genomes]
rs4495228	0.91[ASN][1000 genomes]
rs506401	1.00[EUR][1000 genomes]
rs56243059	0.83[ASN][1000 genomes]
rs57227445	0.83[ASN][1000 genomes]
rs575328	1.00[EUR][1000 genomes]
rs58429198	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58553664	1.00[AMR][1000 genomes]
rs59874488	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60095412	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs605747	1.00[EUR][1000 genomes]
rs61169291	1.00[EUR][1000 genomes]
rs641552	1.00[EUR][1000 genomes]
rs649429	0.82[EUR][1000 genomes]
rs657736	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6594547	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882628	0.94[ASN][1000 genomes]
rs73787704	0.83[ASN][1000 genomes]
rs73787708	0.84[ASN][1000 genomes]
rs7701160	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7705253	0.94[ASN][1000 genomes]
rs7706739	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7708380	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7708790	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7710698	0.94[ASN][1000 genomes]
rs7715250	1.00[AMR][1000 genomes]
rs7719956	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7723663	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7727948	1.00[AMR][1000 genomes]
rs7728161	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7728295	1.00[AMR][1000 genomes]
rs7737873	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv882711	chr5:111116271-111185325	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv882712	chr5:111116271-111233084	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111172600-111182800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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