Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10515435	0.82[EUR][1000 genomes]
rs17133737	0.82[EUR][1000 genomes]
rs17133745	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17133824	0.82[EUR][1000 genomes]
rs17133845	0.82[EUR][1000 genomes]
rs17133847	0.82[EUR][1000 genomes]
rs17133862	0.82[EUR][1000 genomes]
rs17133873	1.00[CEU][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs17133882	1.00[CEU][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs17133892	0.82[EUR][1000 genomes]
rs34926	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs506401	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57342469	0.82[EUR][1000 genomes]
rs575328	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58429198	0.82[EUR][1000 genomes]
rs59874488	0.82[EUR][1000 genomes]
rs605747	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61169291	0.82[EUR][1000 genomes]
rs641552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs657736	0.82[EUR][1000 genomes]
rs6594547	0.82[EUR][1000 genomes]
rs7701160	0.82[EUR][1000 genomes]
rs7706739	0.82[EUR][1000 genomes]
rs7708380	0.82[EUR][1000 genomes]
rs7708790	0.82[EUR][1000 genomes]
rs7719956	0.82[EUR][1000 genomes]
rs7723663	0.82[EUR][1000 genomes]
rs7728161	0.82[EUR][1000 genomes]
rs7737873	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111279400-111283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:111279400-111283400	Weak transcription	NHLF	lung
3	chr5:111279400-111283800	Weak transcription	HMEC	breast
4	chr5:111279400-111283800	Weak transcription	NHEK	skin
5	chr5:111281800-111283400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:111281800-111283400	Weak transcription	Osteobl	bone
7	chr5:111281800-111283600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:111281800-111283600	Weak transcription	NH-A	brain
9	chr5:111281800-111283600	Weak transcription	NHDF-Ad	bronchial
10	chr5:111281800-111283800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:111281800-111283800	Weak transcription	HSMM	muscle
12	chr5:111281800-111283800	Weak transcription	HSMMtube	muscle
13	chr5:111282400-111283400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:111282400-111283600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:111282600-111284200	Weak transcription	Fetal Muscle Leg	muscle
16	chr5:111283000-111285000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:111283200-111284000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:111283200-111284200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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