Variant report
| Variant | rs575328 |
|---|---|
| Chromosome Location | chr5:111261184-111261185 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1003272 | 0.90[EUR][1000 genomes] |
| rs10515435 | 1.00[EUR][1000 genomes] |
| rs17133737 | 1.00[EUR][1000 genomes] |
| rs17133745 | 1.00[EUR][1000 genomes] |
| rs17133824 | 1.00[EUR][1000 genomes] |
| rs17133845 | 1.00[EUR][1000 genomes] |
| rs17133847 | 1.00[EUR][1000 genomes] |
| rs17133862 | 1.00[EUR][1000 genomes] |
| rs17133873 | 1.00[EUR][1000 genomes] |
| rs17133882 | 1.00[EUR][1000 genomes] |
| rs17133892 | 1.00[EUR][1000 genomes] |
| rs34926 | 0.98[ASN][1000 genomes] |
| rs506401 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57342469 | 1.00[EUR][1000 genomes] |
| rs58429198 | 1.00[EUR][1000 genomes] |
| rs59874488 | 1.00[EUR][1000 genomes] |
| rs60095412 | 0.90[EUR][1000 genomes] |
| rs605747 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61169291 | 1.00[EUR][1000 genomes] |
| rs641552 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs649429 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs657736 | 1.00[EUR][1000 genomes] |
| rs6594547 | 1.00[EUR][1000 genomes] |
| rs7701160 | 1.00[EUR][1000 genomes] |
| rs7706739 | 1.00[EUR][1000 genomes] |
| rs7708380 | 1.00[EUR][1000 genomes] |
| rs7708790 | 1.00[EUR][1000 genomes] |
| rs7719956 | 1.00[EUR][1000 genomes] |
| rs7723663 | 1.00[EUR][1000 genomes] |
| rs7728161 | 1.00[EUR][1000 genomes] |
| rs7737873 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv599367 | chr5:110924280-111602713 | Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:111256800-111264800 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
