Variant report

Variant	rs34926
Chromosome Location	chr5:111313145-111313146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2900059	1.00[EUR][1000 genomes]
rs506401	0.98[ASN][1000 genomes]
rs575328	0.98[ASN][1000 genomes]
rs605747	0.98[ASN][1000 genomes]
rs641552	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs649429	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111305800-111313400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:111309400-111313800	Enhancers	Osteobl	bone
3	chr5:111309800-111319600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:111310600-111314000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:111311000-111315800	Weak transcription	Psoas Muscle	Psoas
6	chr5:111311200-111320000	Weak transcription	Left Ventricle	heart
7	chr5:111311200-111320000	Weak transcription	Right Ventricle	heart
8	chr5:111311800-111313600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:111312200-111313200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:111312400-111313400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr5:111312800-111313200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:111312800-111319000	Weak transcription	NHLF	lung
13	chr5:111313000-111313600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:111313000-111313800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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