Variant report

Variant	rs17133745
Chromosome Location	chr5:111115506-111115507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111092135..111094949-chr5:111115054..111117896,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134986	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1003272	0.90[EUR][1000 genomes]
rs10515435	1.00[EUR][1000 genomes]
rs17133737	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133824	1.00[EUR][1000 genomes]
rs17133845	1.00[EUR][1000 genomes]
rs17133847	1.00[EUR][1000 genomes]
rs17133862	1.00[EUR][1000 genomes]
rs17133873	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17133882	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17133892	1.00[EUR][1000 genomes]
rs506401	1.00[EUR][1000 genomes]
rs57342469	1.00[EUR][1000 genomes]
rs575328	1.00[EUR][1000 genomes]
rs58429198	1.00[EUR][1000 genomes]
rs59874488	1.00[EUR][1000 genomes]
rs60095412	0.90[EUR][1000 genomes]
rs605747	1.00[EUR][1000 genomes]
rs61169291	1.00[EUR][1000 genomes]
rs641552	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs649429	0.82[EUR][1000 genomes]
rs657736	1.00[EUR][1000 genomes]
rs6594547	1.00[EUR][1000 genomes]
rs7701160	1.00[EUR][1000 genomes]
rs7706739	1.00[EUR][1000 genomes]
rs7708380	1.00[EUR][1000 genomes]
rs7708790	1.00[EUR][1000 genomes]
rs7719956	1.00[EUR][1000 genomes]
rs7723663	1.00[EUR][1000 genomes]
rs7728161	1.00[EUR][1000 genomes]
rs7737873	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv882710	chr5:111103258-111168550	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111107200-111117000	Weak transcription	Pancreas	Pancrea
2	chr5:111110600-111117800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:111110800-111119200	Weak transcription	NHLF	lung
4	chr5:111111000-111115600	Weak transcription	Brain Germinal Matrix	brain
5	chr5:111111000-111117000	Weak transcription	Gastric	stomach
6	chr5:111111000-111117000	Weak transcription	NH-A	brain
7	chr5:111111000-111117000	Weak transcription	NHDF-Ad	bronchial
8	chr5:111111000-111117200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:111111000-111120000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:111111200-111117000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:111111200-111117000	Enhancers	Dnd41	blood
12	chr5:111111200-111117000	Weak transcription	HMEC	breast
13	chr5:111111200-111118000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:111113000-111117000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr5:111114800-111115600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:111114800-111115800	Enhancers	Fetal Thymus	thymus
17	chr5:111114800-111116000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr5:111114800-111116200	Enhancers	Fetal Lung	lung
19	chr5:111114800-111116400	Enhancers	Primary hematopoietic stem cells	blood
20	chr5:111114800-111116400	Enhancers	Fetal Heart	heart
21	chr5:111114800-111117600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr5:111114800-111117600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr5:111114800-111117800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:111115000-111115800	Enhancers	Left Ventricle	heart
25	chr5:111115000-111116200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr5:111115000-111116200	Enhancers	Colon Smooth Muscle	Colon
27	chr5:111115000-111116400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:111115000-111117600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr5:111115200-111115800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr5:111115200-111117000	Weak transcription	Fetal Muscle Leg	muscle
31	chr5:111115200-111117400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr5:111115200-111117600	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr5:111115200-111117800	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr5:111115200-111119200	Enhancers	Osteobl	bone
35	chr5:111115400-111115600	Enhancers	Adipose Nuclei	Adipose
36	chr5:111115400-111116800	Weak transcription	Fetal Stomach	stomach
37	chr5:111115400-111117600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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